XLS《2005》

AUTHOR , DATABASENAME , WEBADDRESS , MichaelY.

Galperin , TheMolecularBiologyDatabaseCollection:2005update , http://nar.oupjournals.org/ Y.Tateno , DDBJincollaborationwithmass-sequencingteamsonannotation , http://www.ddbj.nig.ac.jp CarolaKanz , TheEMBLNucleotideSequenceDatabase , http://www.ebi.ac.uk/embl DennisA.Benson , GenBank , http://www.ncbi.nlm.nih.gov DavidL.Wheeler , DatabaseresourcesoftheNationalCenterforBiotechnologyInformation , http://www.ncbi.nlm.nih.gov CatherineBrooksbank , TheEuropeanBioinformaticsInstitute'

sdataresources:towardssystemsbiology , http://www.ebi.ac.uk DonnaMaglott , EntrezGene:gene-centeredinformationatNCBI , http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene KhelifiAdel , HOPPSIGEN:adatabaseofhumanandmouseprocessedpseudogenes , http://pbil.univ-lyon1.fr/ VictorG.Levitsky , NPRD:NucleosomePositioningRegionDatabase , http://srs6.bionet.nsc.ru/srs6/ Y.Lee , TheTIGRGeneIndices:clusteringandassemblingESTandknowngenesandintegrationwitheukaryoticgenomes , http://www.tigr.org/tdb/tgi PoraKim , ECgene:genomeannotationforalternativesplicing , http://genome.ewha.ac.kr/ECgene/ Hsien-DaHuang , SpliceInfo:aninformationrepositoryformRNAalternativesplicinginhumangenome , http://SpliceInfo.mbc.NCTU.edu.tw/ EndreBarta , DoOP:DatabasesofOrthologousPromoters,collectionsofclustersoforthologousupstreamsequencesfromchordatesandplants , http://doop.abc.hu/ VoichitaD.Marinescu , TheMAPPERdatabase:amulti-genomecatalogofputativetranscriptionfactorbindingsites , http://bio.chip.org/mapper AbelD.González , TRACTOR_DB:adatabaseofregulatorynetworksingamma-proteobacterialgenomes , http://www.bioinfo.cu/Tractor_DB FangZhao , TRED:aTranscriptionalRegulatoryElementDatabaseandaplatformforinsilicogeneregulationstudies , http://rulai.cshl.edu/TRED MatthiasTruss , HuSiDa―thehumansiRNAdatabase:anopen-accessdatabaseforpublishedfunctionalsiRNAsequencesandtechnicaldetailsofefficienttransferintorecipientcells , http://www.human-siRNA-database.net ChangningLiu , NONCODE:anintegratedknowledgedatabaseofnon-codingRNAs , http://noncode.bioinfo.org.cn HaiboZhang , PolyA_DB:adatabaseformammalianmRNApolyadenylation , http://polya.umdnj.edu/polyadb SamGriffiths-Jones , Rfam:annotatingnon-codingRNAsincompletegenomes , http://www.sanger.ac.uk/Software/Rfam/ KenC.Pang , RNAdb―acomprehensivemammaliannoncodingRNAdatabase , http://research.imb.uq.edu.au/RNAdb AlistairM.Chalk , siRNAdb:adatabaseofsiRNAsequences , http://siRNA.cgb.ki.se JamesA.McCloskeyandJefRozenski , TheSmallSubunitrRNAModificationDatabase , http://medlib.med.utah.edu/SSUmods MathiasSprinzlandKonstantinS.Vassilenko , CompilationoftRNAsequencesandsequencesoftRNAgenes , http://www.tRNA.uni-bayreuth.de FlavioMignone , UTRdbandUTRsite:acollectionofsequencesandregulatorymotifsoftheuntranslatedregionsofeukaryoticmRNAs , http://www.ba.itb.cnr.it/UTR/ PaulLu , PA-GOSUB:asearchabledatabaseofmodelorganismproteinsequenceswiththeirpredictedGeneOntologymolecularfunctionandsubcellularlocalization , http://www.cs.ualberta.ca/~bioinfo/PA/GOSUB AmosBairoch , TheUniversalProteinResource(UniProt) , http://www.uniprot.org SvenMikaandBurkhardRost , NMPdb:DatabaseofNuclearMatrixProteins , http://www.rostlab.org/db/NMPdb/ SébastienRey , PSORTdb:aproteinsubcellularlocalizationdatabaseforbacteria , http://db.psort.org/ YunjiaChen , SPD―aweb-basedsecretedproteindatabase , http://spd.cbi.pku.edu.cn Ya-HuiChang , TPMD:adatabaseandresourcesofmicrosatellitemarkergenotypedinTaiwanesepopulations , http://tpmd.nhri.org.tw/ QiaojuanJaneSu , eBLOCKs:enumeratingconservedproteinblockstoachievemaximalsensitivityandspecificity , http://motif.stanford.edu/eblocks/ VladimirA.Ivanisenko , PDBSite:adatabaseofthe3Dstructureofproteinfunctionalsites , http://wwwmgs.bionet.nsc.ru/mgs/gnw/pdbsite/ AndreasHeger , ADDA:adomaindatabasewithglobalcoverageoftheproteinuniverse , http://ekhidna.biocenter.helsinki.fi:9801/sqgraph/pairsdb AronMarchler-Bauer , CDD:aConservedDomainDatabaseforproteinclassification , http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=cdd SaraswathiAbhimanandErikL.L.Sonnhammer , FunShift:adatabaseoffunctionshiftanalysisonproteinsubfamilies , http://FunShift.cgb.ki.se NicolaJ.Mulder , InterPro,progressandstatusin2005 , http://www.ebi.ac.uk/interpro Shu-HsienSheu , PRECISE:aDatabaseofPredictedandConsensusInteractionSitesinEnzymes , http://precise.bu.edu/ CatherineBru , TheProDomdatabaseofproteindomainfamilies:moreemphasison3D , http://www.toulouse.inra.fr/prodom.html NoamKaplan , ProtoNet4.0:Ahierarchicalclassificationofonemillionproteinsequences , http://www.protonet.cs.huji.ac.il JamesCasbonandMansoorA.S.Saqi , S4:structure-basedsequencealignmentsofSCOPsuperfamilies , http://compbio.mds.qmw.ac.uk/S4.html KristianVlahovicek , TheSBASEdomainsequenceresource,release12:predictionofproteindomain-architectureusingsupportvectormachines , http://www.icgeb.trieste.it/sbase ThomasMeinel , TheSYSTERSProteinFamilyDatabasein2005 , http://systers.molgen.mpg.de RichardJ.Roberts , REBASE―restrictionenzymesandDNAmethyltransferases , http://rebase.neb.com/rebase/rebase.html NitaDeshpande , TheRCSBProteinDataBank:aredesignedquerysystemandrelationaldatabasebasedonthemmCIFschema , http://pdbbeta.rcsb.org Jae-MinShinandDoo-HoCho , PDB-Ligand:aliganddatabasebasedonPDBfortheautomatedandcustomizedclassificationofligand-bindingstructures , http://www.idrtech.com/PDB-Ligand/ ThomasLütteke , CarbohydrateStructureSuite(CSS):analysisofcarbohydrate3DstructuresderivedfromthePDB , httP://www.dkfz.de/spec/css/ FrancesPearl , TheCATHDomainStructureDatabaseandrelatedresourcesGene3DandDHSprovidecomprehensivedomainfamilyinformationforgenomeanalysis , http://www.biochem.ucl.ac.uk/bsm/cath/ GanesanPugalenthi , GenDiS:GenomicDistributionofproteinstructuraldomainSuperfamilies , http://www.ncbs.res.in/~faculty/mini/gendis/home.html VéroniqueGiudicelli , IMGT/GENE-DB:acomprehensivedatabaseforhumanandmouseimmunoglobulinandTcellreceptorgenes , http://imgt.cines.fr S.Velankar , E-MSD:anintegrateddataresourceforbioinformatics , http://www.ebi.ac.uk/msd/ RomanA.Laskowski , PDBsummore:newsummariesandanalysesoftheknown3Dstructuresofproteinsandnucleicacids , http://www.ebi.ac.uk/thornton-srv/databases/pdbsum GoranNeshich , STINGReport:convenientweb-basedapplicationforgraphicandtabularpresentationsofproteinsequence,structureandfunctiondescriptorsfromtheSTINGdatabase , http://www.cbi.cnptia.embrapa.br GáborE.Tusnády , PDB_TM:selectionandmembranelocalizationoftransmembraneproteinsintheproteindatabank , http://www.enzim.hu/PDB_TM KateF.Fulton , PFD:adatabasefortheinvestigationofproteinfoldingkineticsandstability , http://pfd.med.monash.edu.au HuaiyuMi , ThePANTHERdatabaseofproteinfamilies,subfamilies,functionsandpathways , http://panther.appliedbiosystems.com JonathanD.Wren , Biomedicaltermmappingdatabases , http://lethargy.swmed.edu/ARGH/argh.asp J.R.Cole , TheRibosomalDatabaseProject(RDP-II):sequencesandtoolsforhigh-throughputrRNAanalysis , http://rdp.cme.msu.edu/ PaulKersey , Integr8andGenomeReviews:integratedviewsofcompletegenomesandproteomes , http://www.ebi.ac.uk/integr8 JoséM.Peregrín-Alvarez , PartiGeneDB―collatingpartialgenomes , http://www.partigenedb.org M.LouiseRiley , ThePEDANTgenomedatabasein2005 , http://pedant.gsf.de ElliotJ.Lefkowitz , PoxvirusBioinformaticsResourceCenter:acomprehensivePoxviridaeinformationalandanalyticalresource , http://www.poxvirus.org PaulStothard , BacMap:aninteractivepictureatlasofannotatedbacterialgenomes , http://wishart.biology.ualberta.ca/BacMap/ HiroyukiOgataandJean-MichelClaverie , Metagrowth:anewresourceforthebuildingofmetabolichypothesesinmicrobiology , http://igs-server.cnrs-mrs.fr/axenic/ LihongChen , VFDB:areferencedatabaseforbacterialvirulencefactors , http://www.mgc.ac.cn/VFs/ RajuV.Misra , EchoBASE:anintegratedpost-genomicdatabaseforEscher........