PDF《程时锋个人简历/Curriculum Vitae》

图表总结. ACADEMIC EXPERIENCE/其他学术经历 ? 2018年1月24日,作为被邀请的spaker参加香港大学举办的 大数据学术论坛 ,演讲题目: 10KP: A Phylodiverse Genome Sequencing Plan ?

2018 年1月12-18 日,参加在美国圣迭哥举行的 国际动植物基因组大学 , PAG XXVI ?

2017 年7月23-29 日,在第十九届国际植物学大会(IBC2017)期间,作为组织者,组织了一个 workshop (T5-33), workshop 题目 Biodiverse sequencing: beyond crop and model species .并同时在不同的 workshop 中给了三个 talks. ?

2017 年1月,在美国圣迭哥参加国际动植物基因组学大会, PAG XXV,并展示了 poster. ?

2016 年12 月,被邀请作为 speaker 参加香港大学举办的第一届 大数据学术论坛 ,演讲题目 Big Data in Genomics . ?

2016 年5月27 日,被邀请作为 speaker 参加香港大学举办的 植物基因组进化和适应性 workshop ,演讲题目 Plant genome evolution and adaptation: perspectives from large-scale genomic and transcriptomic study ?

2016 年1月,参加美国圣迭哥国际动植物基因组学会议. ?

2016 年1月14 日,被邀请在美国 UC-Davis 生物科学院,作为 speaker 给了 talk A remarkable journey of plant genome evolution and adaptation ?

2016 年1月15-18 日,被邀请参观美国 Davis 的Arcadia Biosceicne 农业公司,并作 Data-derived Science and Precision Agriculture 的演讲. ?

2014 年12 月,在非洲肯尼亚内罗毕,参加 AOCC 年度会议,给talk Orphan crops are not orphan anymore:

101 genome sequencing effort from BGI ?

2013 年11 月7日-12 月12 日,在上海生命科学院作访问学者. RESEARCH INTERESTS/科研兴趣 ? 比较进化基因组和比较系统发育基因组学 (plants for big evolution) ? 生物固氮基因组进化多样性和遗传代谢通路 (plants for agriculture) ? 植物应用与人类营养健康(中医药与人体疾病健康)(plants for human health) PUBLICATIONS/发表的论文 In review: (As the very last correspondence author, about genome diversity and evolution of root nodule symbiosis) 1, Maximilian Griesmann, et al., Martin Parniske*, Pierre-Marc Delaux6*, Shifeng Cheng*. Phylogenomics reveals multiple independent losses of the nitrogen-fixing root nodule symbiosis. 2018. (Science, in review). (early land plant evolution and symbiosis with cyanobacterial responsible for nitrogen fixation) 2, Fay-Wei Li, Paul Brouwer, Lorenzo Carretero-Paulet, Shifeng Cheng, Jan de Vries, Pierre-Marc Delaux, Ariana Eily, Nils Koppers, Li-Yaung Kuo, Zheng Li, Mathew Simenc, Ian Small, EricWafula, Stephany Angarita, Michael S. Barker, Andrea Braeutigam, Claude dePamphilis, SvenGould, Prashant S. Hosmani, Yao-Moan Huang, Bruno Huettel, Yoichiro Kato, Xin Liu5, Steven Maere, Rose McDowell, Lukas A. Mueller, Klaas G. Nierop, Stefan A. Rensing, Tanner Robison, CarlJ. Rothfels, Erin M. Sigel, Yue Song, Prakash R. Timilsina, Yves Van de Peer, Hongli Wang, Per K.I.Wilhelmsson, Paul G. Wolf, Xun Xu, Joshua P. Der, Henriette Schluepmann, Gane K.-S. Wong ,Kathleen M. Pryer. Fern genomes elucidate land plant evolution

1 and cyanobacterial symbioses. 2018. (submitted to Nature Plants) 3, Yibo Dong+, Shichao Chen+, Shifeng Cheng, Qing Ma, Zhiduan Chen, Chengxin Fu, Xin Liu, Jenny Xiang*, Yunpeng Zhao*, Gane Wang*, Pamela S. Soltis*, Douglas E Soltis* . Comparative transcriptomic analyses of eastern Asian-eastern North American disjunct species pairs revealed universal genome-wide patterns and positive selection of functional gene evolution in geographic speciation. 2018. (submitted to PNAS). As first/co-first authors: 4, Shifeng Cheng, Michael Melkonian, Stephen A. Smith, Samuel Brockington, John M. Archibald, Pierre-Marc Delaux, Fay-wei Li, Barbara Melkonian, Evgeny V. Mavrodiev, Wenjing Sun, Yuan Fu, Huanming Yang, Douglas E. Soltis, Sean W. Graham, Pamela S. Soltis, Xin Liu, Xun Xu, Gane Ka-Shu Wong. 10KP: A Phylodiverse Genome Sequencing Plan. 2018. GigaScience, giy013, https://doi.org/10.1093/gigascience/giy013 5, Shifeng Cheng, Bernard Gutmann, Xiao Zhong, Yongtao Ye, Mark F. Fisher, Fengqi Bai, Ian Castleden, Yue Song, Bo Song, Xin Liu, Xun Xu, Boon Leong Lim, Charles S. Bond, Siu-Ming Yiu, Ian Small. Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants. The Plant Journal, (2016), doi: 10.1111/tpj.13121. 6, Senjie Lin, ? Shifeng Cheng, ? Bo Song, ? Xiao Zhong, ? Xin Lin, ? Wujiao Li, Ling Li, Yaqun Zhang, Huan Zhang, Zhiliang Ji, Meichun Cai, Yunyun Zhuang, ? Xinguo Shi, Lingxiao Lin, Lu Wang, Zhaobao Wang, Xin Liu, Sheng Yu, Peng Zeng, Han Hao, Quan Zou, Chengxuan Chen, Yanjun Li, Ying Wang, Chunyan Xu, Shanshan Meng, Xun Xu, Jun Wang, Huanming Yang, David A. Campbell, Nancy R. Sturm, Steve Dagenais-Bellefeuille, David Morse: The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis. Science 11/2015;